A.E. Murphy, I.C. Anderson, A.R. Smyth, M.W. Luckenbach, B. Song. 2016. Dissimilatory nitrate reduction to ammonium (DNRA) exceeds denitrification in hard clam cultivation sediments. Limnology and Oceanography. DOI 10.1002/lno.10305

A.E. Murphy, K.A. Emery, I.C. Anderson, M.L. Pace, M.J. Brush, J.E. Rheuban. 2016. Quantifying the effects of commercial clam aquaculture on carbon and nitrogen cycling: An integrated ecosystem approach. Estuaries and Coasts. DOI 10.1007/s12237-016-0106-0

A.E. Murphy, I.C. Anderson, and M.W. Luckenbach. 2015. Enhanced nutrient regeneration at commercial hard clam (Mercenaria mercenaria) beds and the role of macroalgae. Marine Ecology Progress Series. DOI 10.3354/meps11301

Brousseau, D.J, A.E. Murphy, N.P. Enriquez, K. Gibbons. 2008. Foraging by two estuarine fishes, Fundulus heteroclitus and Fundulus majalis, on Juvenile Asian Shore Crabs (Hemigrapsus sanguineus) in Western Long Island Sound. Estuaries and Coasts 31: 144-151. DOI 10.1007/s12237-007-9006-7